Everything here runs on your own Mac. No accounts, no keys, no subscription, and nothing you write ever leaves the machine.
This is the one thing worth understanding before anything else, because the two get confused and they have almost nothing to do with each other. Settings ▸ AI has two rows:
| Writing & answers | Search by meaning | |
|---|---|---|
| What it does | Writes. Answers questions, summarises, drafts, explains, suggests. | Finds. Works out which of your pages are about the same thing. |
| Where it comes from | Ollama, which you install yourself. | MojoPad brings one. You can use your own instead. |
| Without it | Every ✦ command is unavailable and says so. | Related and search by meaning fall back to matching words instead. |
So the row that goes blank when Ollama is not running is the top one, and that is correct — writing needs Ollama. Finding does not. If you have ever wondered why searching by meaning kept working while the AI said it was unavailable, that is why.
Only a writing model (Ollama required): Ask in every scope, ✦ Summarize, ✦ Suggest tags, Synthesis, Reflect in the Journal, ✦ Explain, ✦ Draft with AI, ✦ Group with AI, ✦ Break it down, ✦ Outline This Page, ✦ Draft from This Outline, territory names, and ✦ Why now.
Only a meaning model (works with nothing else installed): searching by meaning, Related by meaning, the suggestions that appear as you write, Rediscover, the graph's meaning edges, territory shapes, ghost threads on a board, and ✦ Arrange by meaning.
Both: mindmap grounding, the Journal's ✦ Beyond your notes and ✦ Where your notes disagree cards, background thinking, and questions about a long PDF or book.
Neither: ordinary search, links, tags, folders, the whole editor — everything MojoPad was before any of this existed. With no models at all, Related still works by comparing the words two pages share. It is cruder, and it is not nothing.
ollama.com and pull a model:
ollama pull qwen3 is a good current default. MojoPad prefers the newest capable one you
have.ollama pull mxbai-embed-large or
nomic-embed-text — and pick it under Search by meaning.The Search by meaning row offers Automatic, MojoPad's own, and any embedding models you have installed. Automatic is not a synonym for MojoPad's own — it means use one of mine if I have one:
If you keep Ollama on Automatic, pin your choice instead. On Automatic, quitting Ollama changes which model is in hand — and a different model means the index is rebuilt from scratch. Start Ollama again and it rebuilds back. A laptop that sleeps with Ollama off can churn through that repeatedly. Choosing a model by name is honoured without consulting Ollama at all, so pinning ends it.
Nothing you wrote is at risk. What gets rebuilt is the index: two models do not produce comparable numbers, and measuring one against the other does not fail cleanly — it returns a confident score that means nothing. So MojoPad records which model built each index and refuses to mix them.
Three things follow. The rebuild is per wiki, and happens as you open each one, so a wiki you do not open keeps its old index. Every long PDF or book you have asked questions of is re-read on its next question, which on a large book is minutes rather than moments. And the model itself is fetched once for the whole Mac — it is the index that is per wiki, not the download.
Probably, if yours is a large one, and that is the honest answer. Ours describes each passage with 384 numbers where a larger model uses a thousand or more, which leaves it less room to tell your pages apart. It exists so that somebody who has installed nothing is not left with a wiki that cannot find anything by meaning — which is what they had before — not because it beats what you already run.
It reads English. If you write in another language and have models of your own, use one that is trained for it: choose it under Search by meaning and the index will rebuild around it.
MojoPad's own model runs inside MojoPad, which has one consequence: anything reading your wiki from outside cannot use it. The browser extension's related by meaning suggestions and an AI agent's “which wiki knows about this?” both need an Ollama embedding model, because they run as their own small programs with no MojoPad window to borrow. Wikis indexed with MojoPad's own model are simply reported as unavailable to those two.
And in a password-protected document the meaning index is itself encrypted, encrypted pages stay out of it entirely, and an agent asking from outside cannot read it at all.
Bigger models are smarter, but they need a beefier Mac — more memory and more patience. A model runs from your Mac's memory, so as a rule of thumb its download size wants to fit comfortably in RAM with room to spare. A rough guide:
qwen3:4b, llama3.2.qwen3:8b, gpt-oss.qwen3:14b, qwen3:32b.llama3.3:70b, big qwen3/gpt-oss builds.When in doubt, start smaller — a snappy answer beats a brilliant one that takes a minute and makes the fans roar. MojoPad picks a model automatically; override it in Settings ▸ AI, or right in the AI drawer's header — a small dropdown by the close button lets you pick which model answers, or leave it on ✦ Auto.
Click ✦ AI in the toolbar — or press ⇧⌘A — and MojoPad's assistant slides
out in its own drawer on the right (drag its left edge to resize it — the width is
remembered, and double-clicking the edge resets it). It opens with a greeting and a few starter prompts;
ask a question in plain language and the answer streams back as formatted text, with the
pages it drew from listed as source chips — click one to open that page right beside the
chat. Follow-up questions keep their context, so “tell me more about the second one” just works,
and the + New button by the input starts a fresh conversation. You can also select text in
any page, right-click, and choose Ask Your Wiki about “…” to send it straight to the drawer.
The scope picker in the input bar decides what you're asking:
All four stay entirely on your Mac, and MojoPad remembers which scope you used last. And the ✦ Persona chip beside the scope picker changes how answers are written — see AI Personas.
An answer names the pages it drew on in square brackets. Every one of those names is checked, once, against the pages the answer was actually written from — so what you see is not the assistant's word for it:
Underneath, the pages split into Cited — the ones the answer leaned on — and Also read, which were in front of it and never mentioned. The difference matters: a thin answer sitting under a long list of sources looks better supported than it is.
None of this asks the AI anything. It is plain name-matching, so it works the same whatever model you use, and it cannot itself be wrong in the way it is checking for.
Some questions are not about a page, they are about the whole wiki — where do my notes disagree with each other? is the clearest example. Those cannot honestly be answered from the handful of pages that best match the words in the question.
Ask one and MojoPad says so, and offers the choice: read every page — in stages, condensing as it goes, which takes minutes of your own Mac's thinking and can be stopped at any point — or answer from the closest pages, which is quick. Nothing long ever starts without you asking for it. If the reading turns up nothing, it says that too, rather than assembling an answer out of whatever it happened to see.
Questions understand time. Ask “what was I working on in July?” or “summarize my notes from last quarter” and the drawer scopes its reading to that window — both when a note was written and when its content talks about that time. Follow-ups inherit the window until you name a new one, so “and what about August?” does what you'd hope.
A good answer is worth keeping: press ↳ Save as Page beneath it and the answer becomes a real page — named after your question, the answer rendered, with a footer that records when you asked and links to the source pages. Those are ordinary wiki links, so the saved answer appears in the graph and in each source's Backlinks, exactly like a page you wrote yourself. Answers from Anything scope are stamped as the model's own knowledge instead — so future-you knows which pages came from your notes and which came from a machine.
In the drawer's This page scope, ✦ Summarize this page condenses the open page to bullet points — and it works on PDF and ePub attachments too. Long documents are summarized in full: the book is read part by part (progress ticks off in the chat), then the part summaries are distilled into one digest of the whole work. A full-length book takes some minutes of local crunching — start it, make coffee, come back to an executive summary. ✦ Suggest tags proposes tags you can add to the page with a click.
This one needs nothing installed. Finding a page by what it is about, rather than by the words that happen to be in it, uses a small model MojoPad brings with it. The first time you ask for it, it says so and fetches the model once — about 35 MB, roughly a podcast episode — and after that it works here with no connection at all, and nothing you write is ever sent anywhere. Ask for pottery firing and the note that says fired the kiln overnight at cone six comes back, though it shares not one word with what you typed.
The setting is Settings ▸ AI ▸ Search by meaning, and it offers three kinds of thing:
Changing this rebuilds each wiki's meaning index from scratch, quietly, in the background. Two models don't measure alike, so nothing carries over — see below.
Either way MojoPad indexes your pages (the index lives inside the document and updates as you edit). You get:
Several of MojoPad's most useful AI features live outside the drawer:
⌃⌘G) and the ✦ AI… menu lets you
chat with your wiki (a multi-turn, cited conversation), group pages into AI-named
Territories, Explain this graph, Find issues to fix, and suggest links and pages
to create. See The Graph.Both run on the same local model and embedding index as everything else here.
So future-you always knows which pages came from your own hand and which MojoPad assembled, AI-built pages are marked in the list: an auto-built index page carries an accent ✦, a Map of Content a ✧, and answers you saved from Ask are flagged too. The page list's filter menu can show only AI-built pages, so a quick audit of “what did the machine write?” is one click away.
Everything happens on this Mac. Encrypted pages are excluded from retrieval and indexing; in password-protected documents the semantic index is itself encrypted.
Two models do not measure alike, so nothing carries over when you switch: the wiki's meaning index is built again from scratch, quietly, in the background. That is deliberate. Comparing numbers from one model against numbers from another does not produce a wrong answer you could spot — it produces a confident one that means nothing. So MojoPad records which model wrote each index and refuses to mix them.
If searching by meaning ever comes back empty when you expect something, Help ▸ Diagnostics names the model that built the index for each wiki, and how many pages are in it.